STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDO59848.1Transcriptional regulator, Cro/CI family. (117 aa)    
Predicted Functional Partners:
CDO59760.1
DNA polymerase III delta subunit.
  
     0.744
nadE
NAD synthetase / Glutamine amidotransferase chain of NAD synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
    
  0.714
CDO59849.1
S-adenosylmethionine synthetase; Belongs to the AdoMet synthase family.
 
  
  0.693
CDO60924.1
Large exoproteins involved in heme utilization or adhesion.
  
     0.686
CDO58770.1
FIG003603: membrane protein, putative.
  
     0.670
CDO58771.1
FIG003492: Threonine dehydrogenase and related Zn-dependent dehydrogenases.
  
     0.656
CDO59260.1
Methyl-accepting chemotaxis protein.
  
     0.653
CDO61442.1
ATP/GTP-binding site motif A.
  
     0.650
CDO58934.1
FIG00481961: hypothetical protein.
  
     0.602
recO
DNA recombination and repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
    0.595
Your Current Organism:
Phaeomarinobacter ectocarpi
NCBI taxonomy Id: 1458461
Other names: C. Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter ectocarpi, bacterium Ec32
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