STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDO60156.1Possible sterol desaturase. (268 aa)    
Predicted Functional Partners:
CDO60157.1
Phosphohistidine phosphatase SixA.
       0.755
CDO58265.1
COG0398: uncharacterized membrane protein.
 
     0.647
CDO59701.1
Probable iron-sulfur binding protein YPO1417.
  
 
  0.581
CDO59974.1
Sterol desaturase family protein, putative.
  
     0.579
CDO60155.1
Putative nitrite reductase.
       0.554
CDO60467.1
Hypothetical protein.
 
     0.492
CDO58317.1
Phytoene synthase.
   
  0.477
CDO58318.1
Phytoene synthase.
   
  0.477
CDO59409.1
Phytoene synthase.
   
  0.477
CDO61206.1
Phytoene/squalene synthetase-like protein.
   
  0.477
Your Current Organism:
Phaeomarinobacter ectocarpi
NCBI taxonomy Id: 1458461
Other names: C. Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter ectocarpi, bacterium Ec32
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.