STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDO60581.1Putative autotransporter protein. (1071 aa)    
Predicted Functional Partners:
CDO60583.1
FIG00977956: hypothetical protein.
 
     0.816
CDO60582.1
Hypothetical protein.
 
     0.700
CDO61469.1
Alkaline phosphatase.
  
     0.690
CDO60666.1
Putative autotransporter protein.
 
  
 0.666
CDO60286.1
Fumarylacetoacetate hydrolase family protein.
  
     0.657
CDO61144.1
Hypothetical protein.
  
     0.635
CDO59526.2
Carbohydrate esterase|CE14.
  
     0.547
CDO59485.1
Serine protease.
  
     0.531
CDO61328.1
Hypothetical protein.
  
     0.486
CDO58252.1
Sulfatase, family S3.
  
     0.453
Your Current Organism:
Phaeomarinobacter ectocarpi
NCBI taxonomy Id: 1458461
Other names: C. Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter ectocarpi, bacterium Ec32
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.