STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDO60750.1Glycosyl transferase|GT83. (560 aa)    
Predicted Functional Partners:
CDO59674.1
Glycosyl transferase|GT2.
 
 
 0.959
CDO60400.2
Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-).
 
  
 0.764
CDO60402.1
3-deoxy-D-manno-octulosonic acid transferase|GT30; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
 
  
  0.745
lpxK
Tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).
  
  
 0.709
CDO60751.1
Hypothetical protein.
       0.651
CDO60748.1
Hypothetical protein VC0266 (sugar utilization related?).
       0.597
CDO60747.1
Butyryl-CoA dehydrogenase.
       0.596
CDO60749.1
Lysophospholipase.
       0.596
CDO61008.1
UDP-2,3-diacylglucosamine pyrophosphatase.
  
     0.543
CDO60403.1
Protein of unknown function DUF374.
  
     0.515
Your Current Organism:
Phaeomarinobacter ectocarpi
NCBI taxonomy Id: 1458461
Other names: C. Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter ectocarpi, bacterium Ec32
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.