STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDO61410.1Probable dioxygenase. (287 aa)    
Predicted Functional Partners:
CDO61088.1
Glutamate synthase [NADPH] large chain.
  
 
  0.663
CDO61411.2
Cu(I)-responsive transcriptional regulator.
       0.610
CDO61409.1
Hypothetical protein.
       0.558
CDO60238.1
Alkanesulfonate monooxygenase.
  
 
  0.460
CDO60672.1
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic components.
  
 
  0.431
CDO60670.1
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.
  
 
  0.414
CDO58550.1
Hypothetical protein.
  
 
  0.410
CDO60671.1
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component.
 
 
  0.409
CDO61412.1
Lead, cadmium, zinc and mercury transporting ATPase; Copper-translocating P-type ATPase.
       0.408
Your Current Organism:
Phaeomarinobacter ectocarpi
NCBI taxonomy Id: 1458461
Other names: C. Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter ectocarpi, bacterium Ec32
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