CDO61466.1 protein (Phaeomarinobacter ectocarpi)

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Score

CDO61466.1

Cold shock protein CspA. (68 aa)

Predicted Functional Partners:

rpoZ

0.791

CDO58298.1

0.787

rpoA

0.775

rplS

0.556

rplT

0.553

rpmA

0.546

rplC

0.493

rpmE

0.482

rpsL

0.477

rpsG

0.476

Your Current Organism:

Phaeomarinobacter ectocarpi

NCBI taxonomy Id: 1458461
Other names: C. Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter ectocarpi, bacterium Ec32

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDO58298.1	CDO61466.1	BN1012_Phect84	BN1012_Phect3254	DNA-directed RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Cold shock protein CspA.	0.787
CDO58298.1	rplC	BN1012_Phect84	BN1012_Phect3295	DNA-directed RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	LSU ribosomal protein L3p (L3e); One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.993
CDO58298.1	rplS	BN1012_Phect84	BN1012_Phect1305	DNA-directed RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	LSU ribosomal protein L19p; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.957
CDO58298.1	rplT	BN1012_Phect84	BN1012_Phect1713	DNA-directed RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	LSU ribosomal protein L20p; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.941
CDO58298.1	rpmA	BN1012_Phect84	BN1012_Phect1226	DNA-directed RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	LSU ribosomal protein L27p; Belongs to the bacterial ribosomal protein bL27 family.	0.926
CDO58298.1	rpmE	BN1012_Phect84	BN1012_Phect716	DNA-directed RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	LSU ribosomal protein L31p @ LSU ribosomal protein L31p, zinc-independent; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.	0.434
CDO58298.1	rpoA	BN1012_Phect84	BN1012_Phect3272	DNA-directed RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
CDO58298.1	rpoZ	BN1012_Phect84	BN1012_Phect3182	DNA-directed RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.998
CDO58298.1	rpsG	BN1012_Phect84	BN1012_Phect81	DNA-directed RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	SSU ribosomal protein S7p (S5e); One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.998
CDO58298.1	rpsL	BN1012_Phect84	BN1012_Phect82	DNA-directed RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	SSU ribosomal protein S12p (S23e); Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	0.986
CDO61466.1	CDO58298.1	BN1012_Phect3254	BN1012_Phect84	Cold shock protein CspA.	DNA-directed RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.787
CDO61466.1	rplC	BN1012_Phect3254	BN1012_Phect3295	Cold shock protein CspA.	LSU ribosomal protein L3p (L3e); One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.493
CDO61466.1	rplS	BN1012_Phect3254	BN1012_Phect1305	Cold shock protein CspA.	LSU ribosomal protein L19p; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.556
CDO61466.1	rplT	BN1012_Phect3254	BN1012_Phect1713	Cold shock protein CspA.	LSU ribosomal protein L20p; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.553
CDO61466.1	rpmA	BN1012_Phect3254	BN1012_Phect1226	Cold shock protein CspA.	LSU ribosomal protein L27p; Belongs to the bacterial ribosomal protein bL27 family.	0.546
CDO61466.1	rpmE	BN1012_Phect3254	BN1012_Phect716	Cold shock protein CspA.	LSU ribosomal protein L31p @ LSU ribosomal protein L31p, zinc-independent; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.	0.482
CDO61466.1	rpoA	BN1012_Phect3254	BN1012_Phect3272	Cold shock protein CspA.	DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.775
CDO61466.1	rpoZ	BN1012_Phect3254	BN1012_Phect3182	Cold shock protein CspA.	DNA-directed RNA polymerase omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.791
CDO61466.1	rpsG	BN1012_Phect3254	BN1012_Phect81	Cold shock protein CspA.	SSU ribosomal protein S7p (S5e); One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.476
CDO61466.1	rpsL	BN1012_Phect3254	BN1012_Phect82	Cold shock protein CspA.	SSU ribosomal protein S12p (S23e); Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	0.477