STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDO59175.1ATP-DEPENDENT DNA HELICASE. (999 aa)    
Predicted Functional Partners:
CDO59176.1
Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog).
 
     0.826
CDO60115.1
GcrA cell cycle regulator.
  
     0.628
CDO59178.1
CarD-like transcriptional regulator.
 
     0.538
CDO59177.1
4Fe-4S ferredoxin, iron-sulfur binding; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
       0.527
lysS
Lysyl-tRNA synthetase (class I); Belongs to the class-I aminoacyl-tRNA synthetase family.
  
     0.513
CDO59549.1
Hypothetical protein.
  
     0.504
CDO58934.1
FIG00481961: hypothetical protein.
  
     0.492
CDO59174.1
Hypothetical protein.
       0.488
CDO59163.1
Aerobic cobaltochelatase CobT subunit.
  
     0.473
CDO59591.1
Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock).
  
     0.448
Your Current Organism:
Phaeomarinobacter ectocarpi
NCBI taxonomy Id: 1458461
Other names: C. Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter ectocarpi, bacterium Ec32
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.