STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL17710.1Reduced coenzyme F420:NADP oxidoreductase. (232 aa)    
Predicted Functional Partners:
SCL35456.1
Coenzyme F420-0:L-glutamate ligase / coenzyme F420-1:gamma-L-glutamate ligase.
 
     0.610
SCL17706.1
Exoribonuclease R.
       0.582
SCL35453.1
LPPG:FO 2-phospho-L-lactate transferase.
 
     0.509
SCL33321.1
Sporulation-control protein spo0M.
  
     0.459
SCL29636.1
5,10-methylenetetrahydromethanopterin reductase.
  
    0.448
SCL32668.1
Sporulation-control protein.
  
     0.428
SCL35445.1
FO synthase subunit 1 /FO synthase subunit 2.
 
     0.413
Your Current Organism:
Micromonospora pallida
NCBI taxonomy Id: 145854
Other names: ATCC 15838, DSM 43817, IFO 16070, JCM 3133, M. pallida, Micromonospora echinospora subsp. pallida, NBRC 16070, NRRL 2996
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.