STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL18797.1Rrf2 family protein. (155 aa)    
Predicted Functional Partners:
SCL18792.1
acyl-CoA thioesterase-2.
       0.844
SCL18788.1
Pyruvate kinase; Belongs to the pyruvate kinase family.
       0.843
SCL17964.1
Cysteine desulfurase.
 
 
 0.762
SCL34296.1
Cysteine desulfurase.
  
 
 0.729
SCL18802.1
Hypothetical protein.
 
     0.586
SCL19169.1
Nitrogen fixation protein NifU.
  
  
 0.575
Your Current Organism:
Micromonospora pallida
NCBI taxonomy Id: 145854
Other names: ATCC 15838, DSM 43817, IFO 16070, JCM 3133, M. pallida, Micromonospora echinospora subsp. pallida, NBRC 16070, NRRL 2996
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.