STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL19307.1Squalene-hopene cyclase C-terminal domain-containing protein. (547 aa)    
Predicted Functional Partners:
SCL19302.1
Terpene synthase family, metal binding domain.
 
   
 0.974
SCL36754.1
Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily.
   
 0.966
SCL19298.1
Cytochrome P450.
 
 
 0.905
SCL19311.1
Signal transduction histidine kinase.
 
     0.800
idi
Isopentenyl-diphosphate delta-isomerase; Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).
  
 
 0.787
SCL41818.1
Diphosphomevalonate decarboxylase.
   
 
 0.755
SCL38076.1
Phytoene synthase.
  
 
 0.746
SCL26424.1
Acyl transferase domain-containing protein.
  
 
 0.685
SCL23223.1
hydroxymethylglutaryl-CoA synthase.
   
 
 0.678
SCL21387.1
WD40 repeat.
  
     0.670
Your Current Organism:
Micromonospora pallida
NCBI taxonomy Id: 145854
Other names: ATCC 15838, DSM 43817, IFO 16070, JCM 3133, M. pallida, Micromonospora echinospora subsp. pallida, NBRC 16070, NRRL 2996
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