STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL21804.1Protein of unknown function. (317 aa)    
Predicted Functional Partners:
SCL21813.1
Protein AroM.
 
     0.928
SCL21800.1
Succinyl-diaminopimelate desuccinylase.
 
     0.926
SCL21796.1
Peptide/nickel transport system substrate-binding protein.
 
 
  0.852
SCL21808.1
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
   
  0.801
SCL21791.1
Peptide/nickel transport system permease protein.
  
 
  0.769
SCL21787.1
Peptide/nickel transport system permease protein.
  
 
  0.767
SCL21782.1
DNA-binding transcriptional regulator, IclR family.
 
     0.744
SCL41102.1
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
  
 
  0.690
SCL21778.1
Dipeptidase E; Belongs to the peptidase S51 family.
 
     0.617
SCL20010.1
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
  
 
  0.534
Your Current Organism:
Micromonospora pallida
NCBI taxonomy Id: 145854
Other names: ATCC 15838, DSM 43817, IFO 16070, JCM 3133, M. pallida, Micromonospora echinospora subsp. pallida, NBRC 16070, NRRL 2996
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.