Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SCL23872.1Hypothetical protein. (252 aa)    
Predicted Functional Partners:
SCL33200.1
Ribonucleoside-diphosphate reductase class II; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen.
  
 0.995
SCL38686.1
DNA gyrase subunit A.
  
 
 0.798
SCL28120.1
Ferredoxin-NADP reductase.
  
 
 0.774
SCL37734.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
  
 
 0.774
SCL23863.1
Hypothetical protein.
       0.773
SCL23868.1
Hypothetical protein.
       0.773
SCL20734.1
P-aminobenzoate N-oxygenase AurF.
  
     0.763
SCL25745.1
P-aminobenzoate N-oxygenase AurF.
  
     0.760
SCL25713.1
Amino acid adenylation domain-containing protein.
  
 0.759
SCL27398.1
Condensation domain-containing protein.
  
 0.759
Your Current Organism:
Micromonospora pallida
NCBI taxonomy Id: 145854
Other names: ATCC 15838, DSM 43817, IFO 16070, JCM 3133, M. pallida, Micromonospora echinospora subsp. pallida, NBRC 16070, NRRL 2996
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