Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SCL18898.1 | SCL24178.1 | GA0074692_0500 | GA0074692_1718 | AraC-type DNA-binding protein. | Regulatory protein, tetR family. | 0.437 |
SCL22004.1 | SCL24178.1 | GA0074692_1306 | GA0074692_1718 | AraC-type DNA-binding protein. | Regulatory protein, tetR family. | 0.408 |
SCL24173.1 | SCL24178.1 | GA0074692_1717 | GA0074692_1718 | Proline iminopeptidase; Belongs to the peptidase S33 family. | Regulatory protein, tetR family. | 0.532 |
SCL24173.1 | def | GA0074692_1717 | GA0074692_1719 | Proline iminopeptidase; Belongs to the peptidase S33 family. | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.525 |
SCL24178.1 | SCL18898.1 | GA0074692_1718 | GA0074692_0500 | Regulatory protein, tetR family. | AraC-type DNA-binding protein. | 0.437 |
SCL24178.1 | SCL22004.1 | GA0074692_1718 | GA0074692_1306 | Regulatory protein, tetR family. | AraC-type DNA-binding protein. | 0.408 |
SCL24178.1 | SCL24173.1 | GA0074692_1718 | GA0074692_1717 | Regulatory protein, tetR family. | Proline iminopeptidase; Belongs to the peptidase S33 family. | 0.532 |
SCL24178.1 | SCL28854.1 | GA0074692_1718 | GA0074692_2618 | Regulatory protein, tetR family. | DNA-binding transcriptional regulator, AcrR family. | 0.434 |
SCL24178.1 | SCL31371.1 | GA0074692_1718 | GA0074692_3100 | Regulatory protein, tetR family. | Activator of Hsp90 ATPase homolog 1-like protein. | 0.425 |
SCL24178.1 | def | GA0074692_1718 | GA0074692_1719 | Regulatory protein, tetR family. | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.762 |
SCL28854.1 | SCL24178.1 | GA0074692_2618 | GA0074692_1718 | DNA-binding transcriptional regulator, AcrR family. | Regulatory protein, tetR family. | 0.434 |
SCL31371.1 | SCL24178.1 | GA0074692_3100 | GA0074692_1718 | Activator of Hsp90 ATPase homolog 1-like protein. | Regulatory protein, tetR family. | 0.425 |
def | SCL24173.1 | GA0074692_1719 | GA0074692_1717 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Proline iminopeptidase; Belongs to the peptidase S33 family. | 0.525 |
def | SCL24178.1 | GA0074692_1719 | GA0074692_1718 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Regulatory protein, tetR family. | 0.762 |