STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL26018.1Ricin-type beta-trefoil lectin domain-containing protein. (529 aa)    
Predicted Functional Partners:
SCL35579.1
Hypothetical protein.
    
   0.918
SCL38104.1
Enterochelin esterase.
   
   0.775
SCL41758.1
Enterochelin esterase.
   
   0.775
SCL18189.1
Chitinase family 18; Belongs to the glycosyl hydrolase 18 family.
 
   
 0.765
SCL19387.1
Cellulose binding domain-containing protein.
    
 0.760
SCL27198.1
Cytochrome c oxidase subunit 3.
    
  0.755
SCL40531.1
alpha-N-arabinofuranosidase.
 
  
 0.667
SCL26012.1
Streptogrisin C. Serine peptidase. MEROPS family S01A.
 
    
0.633
SCL17813.1
Feruloyl esterase.
 
 
   0.615
SCL25142.1
Carbohydrate binding module (family 35); Belongs to the glycosyl hydrolase 43 family.
 
  
 0.602
Your Current Organism:
Micromonospora pallida
NCBI taxonomy Id: 145854
Other names: ATCC 15838, DSM 43817, IFO 16070, JCM 3133, M. pallida, Micromonospora echinospora subsp. pallida, NBRC 16070, NRRL 2996
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