SCL28322.1 protein (Micromonospora pallida) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SCL28322.1

iron(III) transport system substrate-binding protein. (346 aa)

Predicted Functional Partners:

SCL28316.1

0.992

fbpC

0.978

SCL17342.1

0.952

SCL39465.1

0.776

SCL17333.1

0.773

SCL28327.1

0.753

SCL35412.1

0.728

SCL17337.1

0.710

SCL35420.1

0.701

SCL23741.1

0.658

Your Current Organism:

Micromonospora pallida

NCBI taxonomy Id: 145854
Other names: ATCC 15838, DSM 43817, IFO 16070, JCM 3133, M. pallida, Micromonospora echinospora subsp. pallida, NBRC 16070, NRRL 2996

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SCL17333.1	SCL17337.1	GA0074692_0144	GA0074692_0145	iron(III) transport system substrate-binding protein.	iron(III) transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	0.938
SCL17333.1	SCL17342.1	GA0074692_0144	GA0074692_0146	iron(III) transport system substrate-binding protein.	iron(III) transport system permease protein.	0.990
SCL17333.1	SCL23741.1	GA0074692_0144	GA0074692_1638	iron(III) transport system substrate-binding protein.	Molybdate transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	0.658
SCL17333.1	SCL28316.1	GA0074692_0144	GA0074692_2513	iron(III) transport system substrate-binding protein.	iron(III) transport system permease protein.	0.969
SCL17333.1	SCL28322.1	GA0074692_0144	GA0074692_2514	iron(III) transport system substrate-binding protein.	iron(III) transport system substrate-binding protein.	0.773
SCL17333.1	SCL35412.1	GA0074692_0144	GA0074692_4085	iron(III) transport system substrate-binding protein.	Spermidine/putrescine transport system permease protein.	0.728
SCL17333.1	SCL35420.1	GA0074692_0144	GA0074692_4087	iron(III) transport system substrate-binding protein.	Spermidine/putrescine transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	0.791
SCL17333.1	SCL39465.1	GA0074692_0144	GA0074692_5373	iron(III) transport system substrate-binding protein.	Putative spermidine/putrescine transport system permease protein.	0.777
SCL17333.1	fbpC	GA0074692_0144	GA0074692_2512	iron(III) transport system substrate-binding protein.	iron(III) transport system ATP-binding protein; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.	0.806
SCL17337.1	SCL17333.1	GA0074692_0145	GA0074692_0144	iron(III) transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	iron(III) transport system substrate-binding protein.	0.938
SCL17337.1	SCL17342.1	GA0074692_0145	GA0074692_0146	iron(III) transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	iron(III) transport system permease protein.	0.981
SCL17337.1	SCL28316.1	GA0074692_0145	GA0074692_2513	iron(III) transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	iron(III) transport system permease protein.	0.807
SCL17337.1	SCL28322.1	GA0074692_0145	GA0074692_2514	iron(III) transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	iron(III) transport system substrate-binding protein.	0.710
SCL17337.1	SCL35412.1	GA0074692_0145	GA0074692_4085	iron(III) transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Spermidine/putrescine transport system permease protein.	0.965
SCL17337.1	SCL35420.1	GA0074692_0145	GA0074692_4087	iron(III) transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Spermidine/putrescine transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	0.417
SCL17337.1	SCL39465.1	GA0074692_0145	GA0074692_5373	iron(III) transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Putative spermidine/putrescine transport system permease protein.	0.996
SCL17337.1	fbpC	GA0074692_0145	GA0074692_2512	iron(III) transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	iron(III) transport system ATP-binding protein; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.	0.708
SCL17342.1	SCL17333.1	GA0074692_0146	GA0074692_0144	iron(III) transport system permease protein.	iron(III) transport system substrate-binding protein.	0.990
SCL17342.1	SCL17337.1	GA0074692_0146	GA0074692_0145	iron(III) transport system permease protein.	iron(III) transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	0.981
SCL17342.1	SCL23741.1	GA0074692_0146	GA0074692_1638	iron(III) transport system permease protein.	Molybdate transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	0.734