STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL28654.1Protein of unknown function. (632 aa)    
Predicted Functional Partners:
SCL28660.1
Helicase conserved C-terminal domain-containing protein.
 
     0.951
SCL28651.1
PLD-like domain-containing protein.
 
     0.950
SCL28676.1
SNF2 family N-terminal domain-containing protein.
 
 
   0.897
SCL28670.1
Methyltransferase domain-containing protein.
 
     0.892
SCL19169.1
Nitrogen fixation protein NifU.
   
   0.866
SCL20603.1
Helicase conserved C-terminal domain-containing protein.
 
     0.792
SCL20606.1
Methyltransferase domain-containing protein.
 
     0.792
SCL20609.1
Helicase conserved C-terminal domain-containing protein; Manually curated.
 
     0.787
SCL35655.1
Cystathionine beta-synthase.
    
  0.666
SCL28665.1
DNA polymerase-3 subunit epsilon.
 
    0.639
Your Current Organism:
Micromonospora pallida
NCBI taxonomy Id: 145854
Other names: ATCC 15838, DSM 43817, IFO 16070, JCM 3133, M. pallida, Micromonospora echinospora subsp. pallida, NBRC 16070, NRRL 2996
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