STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL32326.1Transcriptional regulatory protein, C terminal. (898 aa)    
Predicted Functional Partners:
SCL18783.1
PAS domain S-box-containing protein.
   
 0.643
SCL37870.1
Signal transduction histidine kinase.
  
 0.622
SCL37873.1
HAMP domain-containing protein.
  
 0.622
SCL33624.1
Histidine kinase-like ATPase domain-containing protein.
   
  0.480
SCL40517.1
Predicted ATPase.
 
 
 0.455
SCL24926.1
AAA ATPase domain-containing protein.
 
 
  0.445
SCL34941.1
Diguanylate cyclase (GGDEF) domain-containing protein.
    
  0.440
SCL34724.1
Thioredoxin reductase (NADPH).
 
  
  0.421
SCL39817.1
Diguanylate cyclase (GGDEF) domain-containing protein.
    
  0.421
Your Current Organism:
Micromonospora pallida
NCBI taxonomy Id: 145854
Other names: ATCC 15838, DSM 43817, IFO 16070, JCM 3133, M. pallida, Micromonospora echinospora subsp. pallida, NBRC 16070, NRRL 2996
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