SCL36116.1 protein (Micromonospora pallida) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SCL36116.1

Membrane protein DedA, SNARE-associated domain. (212 aa)

Predicted Functional Partners:

SCL36110.1

0.545

SCL36106.1

0.513

SCL25129.1

0.497

SCL41378.1

0.487

SCL38302.1

0.464

Your Current Organism:

Micromonospora pallida

NCBI taxonomy Id: 145854
Other names: ATCC 15838, DSM 43817, IFO 16070, JCM 3133, M. pallida, Micromonospora echinospora subsp. pallida, NBRC 16070, NRRL 2996

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SCL25129.1	SCL36116.1	GA0074692_1901	GA0074692_4268	Membrane protein DedA, SNARE-associated domain.	Membrane protein DedA, SNARE-associated domain.	0.497
SCL36106.1	SCL36110.1	GA0074692_4266	GA0074692_4267	Transposase.	Hypothetical protein.	0.723
SCL36106.1	SCL36116.1	GA0074692_4266	GA0074692_4268	Transposase.	Membrane protein DedA, SNARE-associated domain.	0.513
SCL36110.1	SCL36106.1	GA0074692_4267	GA0074692_4266	Hypothetical protein.	Transposase.	0.723
SCL36110.1	SCL36116.1	GA0074692_4267	GA0074692_4268	Hypothetical protein.	Membrane protein DedA, SNARE-associated domain.	0.545
SCL36116.1	SCL25129.1	GA0074692_4268	GA0074692_1901	Membrane protein DedA, SNARE-associated domain.	Membrane protein DedA, SNARE-associated domain.	0.497
SCL36116.1	SCL36106.1	GA0074692_4268	GA0074692_4266	Membrane protein DedA, SNARE-associated domain.	Transposase.	0.513
SCL36116.1	SCL36110.1	GA0074692_4268	GA0074692_4267	Membrane protein DedA, SNARE-associated domain.	Hypothetical protein.	0.545
SCL36116.1	SCL38302.1	GA0074692_4268	GA0074692_4966	Membrane protein DedA, SNARE-associated domain.	Membrane-associated protein.	0.464
SCL36116.1	SCL41378.1	GA0074692_4268	GA0074692_6286	Membrane protein DedA, SNARE-associated domain.	Membrane protein DedA, SNARE-associated domain.	0.487
SCL38302.1	SCL36116.1	GA0074692_4966	GA0074692_4268	Membrane-associated protein.	Membrane protein DedA, SNARE-associated domain.	0.464
SCL41378.1	SCL36116.1	GA0074692_6286	GA0074692_4268	Membrane protein DedA, SNARE-associated domain.	Membrane protein DedA, SNARE-associated domain.	0.487