STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL37565.1Flp pilus assembly protein TadB. (271 aa)    
Predicted Functional Partners:
SCL37571.1
Pilus assembly protein CpaF.
 
  
 0.968
SCL37574.1
Helicase/secretion neighborhood CpaE-like protein.
 
     0.853
SCL38022.1
Pilus assembly protein, ATPase of CpaF family.
 
  
 0.840
SCL37568.1
Tight adherence protein B.
 
     0.835
SCL37562.1
Protein of unknown function.
     
 0.827
SCL38020.1
Cellulose biosynthesis protein BcsQ.
  
  
 0.751
SCL36545.1
Hypothetical protein.
  
  
 0.692
SCL37556.1
Helicase/secretion neighborhood TadE-like protein.
       0.557
SCL37558.1
TadE-like protein.
       0.557
SCL37876.1
Serine phosphatase RsbU, regulator of sigma subunit.
   
    0.553
Your Current Organism:
Micromonospora pallida
NCBI taxonomy Id: 145854
Other names: ATCC 15838, DSM 43817, IFO 16070, JCM 3133, M. pallida, Micromonospora echinospora subsp. pallida, NBRC 16070, NRRL 2996
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.