Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SCL18792.1 | SCL37882.1 | GA0074692_0476 | GA0074692_4820 | acyl-CoA thioesterase-2. | Oligopeptidase B. | 0.407 |
SCL37879.1 | SCL37882.1 | GA0074692_4819 | GA0074692_4820 | Glycolate oxidase FAD binding subunit. | Oligopeptidase B. | 0.587 |
SCL37882.1 | SCL18792.1 | GA0074692_4820 | GA0074692_0476 | Oligopeptidase B. | acyl-CoA thioesterase-2. | 0.407 |
SCL37882.1 | SCL37879.1 | GA0074692_4820 | GA0074692_4819 | Oligopeptidase B. | Glycolate oxidase FAD binding subunit. | 0.587 |
SCL37882.1 | SCL39773.1 | GA0074692_4820 | GA0074692_5481 | Oligopeptidase B. | Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | 0.657 |
SCL37882.1 | SCL41195.1 | GA0074692_4820 | GA0074692_6191 | Oligopeptidase B. | Putative hydrolase; Manually curated. | 0.572 |
SCL37882.1 | clpP | GA0074692_4820 | GA0074692_4444 | Oligopeptidase B. | ATP-dependent Clp protease, protease subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. | 0.841 |
SCL37882.1 | clpP-2 | GA0074692_4820 | GA0074692_6551 | Oligopeptidase B. | ATP-dependent Clp protease proteolytic subunit ClpP; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. | 0.841 |
SCL37882.1 | clpP-3 | GA0074692_4820 | GA0074692_6552 | Oligopeptidase B. | ATP-dependent Clp protease, protease subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. | 0.610 |
SCL37882.1 | hflX | GA0074692_4820 | GA0074692_3522 | Oligopeptidase B. | GTP-binding protein HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family. | 0.424 |
SCL37882.1 | recR | GA0074692_4820 | GA0074692_5482 | Oligopeptidase B. | DNA replication and repair protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.445 |
SCL39773.1 | SCL37882.1 | GA0074692_5481 | GA0074692_4820 | Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | Oligopeptidase B. | 0.657 |
SCL39773.1 | SCL41195.1 | GA0074692_5481 | GA0074692_6191 | Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | Putative hydrolase; Manually curated. | 0.654 |
SCL39773.1 | clpP-3 | GA0074692_5481 | GA0074692_6552 | Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | ATP-dependent Clp protease, protease subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. | 0.876 |
SCL39773.1 | recR | GA0074692_5481 | GA0074692_5482 | Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | DNA replication and repair protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.978 |
SCL41195.1 | SCL37882.1 | GA0074692_6191 | GA0074692_4820 | Putative hydrolase; Manually curated. | Oligopeptidase B. | 0.572 |
SCL41195.1 | SCL39773.1 | GA0074692_6191 | GA0074692_5481 | Putative hydrolase; Manually curated. | Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | 0.654 |
SCL41195.1 | clpP-3 | GA0074692_6191 | GA0074692_6552 | Putative hydrolase; Manually curated. | ATP-dependent Clp protease, protease subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. | 0.880 |
SCL41195.1 | recR | GA0074692_6191 | GA0074692_5482 | Putative hydrolase; Manually curated. | DNA replication and repair protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.405 |
clpP | SCL37882.1 | GA0074692_4444 | GA0074692_4820 | ATP-dependent Clp protease, protease subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. | Oligopeptidase B. | 0.841 |
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