STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL39630.1Predicted dehydrogenase. (341 aa)    
Predicted Functional Partners:
SCL39617.1
dTDP-4-amino-4,6-dideoxygalactose transaminase; Belongs to the DegT/DnrJ/EryC1 family.
 
 
  0.905
SCL28957.1
Inosose dehydratase.
 
 
  0.856
SCL39623.1
Glycosyltransferase involved in cell wall bisynthesis.
 
    0.844
SCL39636.1
L-glutamine:scyllo-inosose aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
 
  0.790
SCL22130.1
Predicted dehydrogenase.
  
  
 
0.779
queF
7-cyano-7-deazaguanine reductase; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1). Belongs to the GTP cyclohydrolase I family. QueF type 1 subfamily.
       0.773
SCL39620.1
Radical SAM superfamily enzyme YgiQ, UPF0313 family.
       0.773
SCL39633.1
3-dehydroquinate synthase.
       0.773
SCL31366.1
Myo-inositol-1(or 4)-monophosphatase.
     
 0.709
SCL34907.1
Myo-inositol-1(or 4)-monophosphatase.
     
 0.700
Your Current Organism:
Micromonospora pallida
NCBI taxonomy Id: 145854
Other names: ATCC 15838, DSM 43817, IFO 16070, JCM 3133, M. pallida, Micromonospora echinospora subsp. pallida, NBRC 16070, NRRL 2996
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