STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL40519.1Phospholipase A2. (179 aa)    
Predicted Functional Partners:
SCL23121.1
Trypsin.
  
     0.587
SCL39798.1
Protein of unknown function.
  
     0.561
SCL25270.1
Streptogrisin D.
  
     0.537
SCL36458.1
Protein of unknown function.
  
     0.517
SCL24831.1
Streptogrisin D.
  
     0.514
SCL28369.1
Alpha-lytic protease prodomain-containing protein.
  
     0.504
SCL26464.1
Acyl transferase domain-containing protein.
 
   
 0.490
SCL17095.1
Pyoverdine/dityrosine biosynthesis protein Dit1.
  
     0.489
SCL30762.1
Streptogrisin D.
  
     0.482
SCL26018.1
Ricin-type beta-trefoil lectin domain-containing protein.
  
     0.480
Your Current Organism:
Micromonospora pallida
NCBI taxonomy Id: 145854
Other names: ATCC 15838, DSM 43817, IFO 16070, JCM 3133, M. pallida, Micromonospora echinospora subsp. pallida, NBRC 16070, NRRL 2996
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