STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL41242.1Biotin-requiring enzyme. (71 aa)    
Predicted Functional Partners:
SCL38402.1
Pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase).
  
 0.992
SCL38610.1
Acetyl-CoA carboxylase, carboxyltransferase component.
 
 0.961
SCL25734.1
propionyl-CoA carboxylase beta chain.
  
 0.953
SCL27118.1
Acetyl/propionyl-CoA carboxylase, alpha subunit.
  
 0.953
SCL35995.1
propionyl-CoA carboxylase carboxyltransferase subunit.
  
 0.953
SCL34112.1
2-isopropylmalate synthase; Belongs to the alpha-IPM synthase/homocitrate synthase family.
  
 
 0.926
SCL36775.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
   
 0.919
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
   
  0.911
leuA
2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 2 subfamily.
  
 
 0.910
SCL17418.1
[acyl-carrier-protein] S-malonyltransferase.
  
 
 0.907
Your Current Organism:
Micromonospora pallida
NCBI taxonomy Id: 145854
Other names: ATCC 15838, DSM 43817, IFO 16070, JCM 3133, M. pallida, Micromonospora echinospora subsp. pallida, NBRC 16070, NRRL 2996
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