STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL41300.1ABC-2 type transport system ATP-binding protein. (311 aa)    
Predicted Functional Partners:
SCL41298.1
ABC-2 family transporter protein.
 
     0.844
SCL40256.1
ABC-2 type transport system permease protein.
  
  0.605
SCL34329.1
Oleandomycin transport system permease protein.
 
 0.603
SCL40224.1
ABC-type transport system involved in multi-copper enzyme maturation, permease component.
   
  0.539
SCL41029.1
ABC-2 type transport system permease protein.
   
  0.539
SCL34827.1
ABC-2 family transporter protein.
  
   0.518
SCL39465.1
Putative spermidine/putrescine transport system permease protein.
  
 
  0.508
atpD
F-type H+-transporting ATPase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
    
   0.491
atpA
ATP synthase F1 subcomplex alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.
    
   0.489
atpG
ATP synthase F1 subcomplex gamma subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.
   
   0.474
Your Current Organism:
Micromonospora pallida
NCBI taxonomy Id: 145854
Other names: ATCC 15838, DSM 43817, IFO 16070, JCM 3133, M. pallida, Micromonospora echinospora subsp. pallida, NBRC 16070, NRRL 2996
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.