STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL41616.1Cell wall-associated hydrolase, NlpC family. (323 aa)    
Predicted Functional Partners:
SCL37870.1
Signal transduction histidine kinase.
    
 0.817
SCL37873.1
HAMP domain-containing protein.
    
 0.817
SCL40562.1
HAMP domain-containing protein.
  
 
 0.778
SCL25815.1
Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family; Manually curated.
  
  
 0.544
ftsE
Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.
 
  
 0.542
SCL18783.1
PAS domain S-box-containing protein.
  
 
 0.535
SCL24883.1
Predicted 5' DNA nuclease, flap endonuclease-1-like, helix-3-turn-helix (H3TH) domain.
  
  
 0.528
SCL41618.1
Integral membrane protein.
       0.515
SCL38833.1
Membrane carboxypeptidase (penicillin-binding protein).
 
   
 0.513
SCL32978.1
Hypothetical protein.
   
  
 0.509
Your Current Organism:
Micromonospora pallida
NCBI taxonomy Id: 145854
Other names: ATCC 15838, DSM 43817, IFO 16070, JCM 3133, M. pallida, Micromonospora echinospora subsp. pallida, NBRC 16070, NRRL 2996
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