Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SCL17217.1 | SCL41663.1 | GA0074692_0117 | GA0074692_6433 | seryl-tRNA synthetase. | Hypothetical protein. | 0.611 |
SCL17217.1 | rplB | GA0074692_0117 | GA0074692_5964 | seryl-tRNA synthetase. | LSU ribosomal protein L2P; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.680 |
SCL33955.1 | SCL41663.1 | GA0074692_3704 | GA0074692_6433 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD. | Hypothetical protein. | 0.558 |
SCL33955.1 | rnpA | GA0074692_3704 | GA0074692_5109 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.531 |
SCL38719.1 | SCL38722.1 | GA0074692_5111 | GA0074692_5112 | YidC/Oxa1 family membrane protein insertase. | spoIIIJ-associated protein. | 0.969 |
SCL38719.1 | SCL41374.1 | GA0074692_5111 | GA0074692_6284 | YidC/Oxa1 family membrane protein insertase. | YidC/Oxa1 family membrane protein insertase. | 0.900 |
SCL38719.1 | SCL41663.1 | GA0074692_5111 | GA0074692_6433 | YidC/Oxa1 family membrane protein insertase. | Hypothetical protein. | 0.652 |
SCL38719.1 | rho | GA0074692_5111 | GA0074692_6313 | YidC/Oxa1 family membrane protein insertase. | Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | 0.840 |
SCL38719.1 | rnpA | GA0074692_5111 | GA0074692_5109 | YidC/Oxa1 family membrane protein insertase. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.975 |
SCL38719.1 | rplB | GA0074692_5111 | GA0074692_5964 | YidC/Oxa1 family membrane protein insertase. | LSU ribosomal protein L2P; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.760 |
SCL38719.1 | secE | GA0074692_5111 | GA0074692_5944 | YidC/Oxa1 family membrane protein insertase. | Preprotein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation. | 0.981 |
SCL38722.1 | SCL38719.1 | GA0074692_5112 | GA0074692_5111 | spoIIIJ-associated protein. | YidC/Oxa1 family membrane protein insertase. | 0.969 |
SCL38722.1 | SCL41374.1 | GA0074692_5112 | GA0074692_6284 | spoIIIJ-associated protein. | YidC/Oxa1 family membrane protein insertase. | 0.805 |
SCL38722.1 | SCL41663.1 | GA0074692_5112 | GA0074692_6433 | spoIIIJ-associated protein. | Hypothetical protein. | 0.559 |
SCL38722.1 | rho | GA0074692_5112 | GA0074692_6313 | spoIIIJ-associated protein. | Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | 0.773 |
SCL38722.1 | rnpA | GA0074692_5112 | GA0074692_5109 | spoIIIJ-associated protein. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.859 |
SCL38722.1 | rplB | GA0074692_5112 | GA0074692_5964 | spoIIIJ-associated protein. | LSU ribosomal protein L2P; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.716 |
SCL41374.1 | SCL38719.1 | GA0074692_6284 | GA0074692_5111 | YidC/Oxa1 family membrane protein insertase. | YidC/Oxa1 family membrane protein insertase. | 0.900 |
SCL41374.1 | SCL38722.1 | GA0074692_6284 | GA0074692_5112 | YidC/Oxa1 family membrane protein insertase. | spoIIIJ-associated protein. | 0.805 |
SCL41374.1 | SCL41663.1 | GA0074692_6284 | GA0074692_6433 | YidC/Oxa1 family membrane protein insertase. | Hypothetical protein. | 0.699 |
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