STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL22313.1PAS/PAC sensor signal transduction histidine kinase. (485 aa)    
Predicted Functional Partners:
SCL24103.1
Signal transduction histidine kinase.
 
0.999
SCL30461.1
Signal transduction histidine kinase.
 
0.999
SCL35067.1
PAS domain S-box-containing protein.
 
0.999
SCL13495.1
Anti-sigma regulatory factor (Ser/Thr protein kinase).
  
 0.997
SCL24083.1
Response regulator receiver domain-containing protein.
 
 0.995
SCL20077.1
Diguanylate cyclase/phosphodiesterase.
  
 0.994
SCL29306.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 0.994
SCL13514.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 0.993
SCL18872.1
Two-component system, OmpR family, response regulator.
 0.993
SCL20495.1
Two-component system, OmpR family, response regulator RegX3.
 0.993
Your Current Organism:
Micromonospora nigra
NCBI taxonomy Id: 145857
Other names: ATCC 33088, DSM 43818, IFO 16103, JCM 8973, M. nigra, Micromonospora halophytica subsp. nigra, Micromonospora halophytica var. nigra, NBRC 16103, NCIMB 2225, NRRL 3097
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