STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL26520.1Hypothetical protein. (156 aa)    
Predicted Functional Partners:
SCL26514.1
Hypothetical protein.
   
   0.984
SCL26510.1
Hypothetical protein.
       0.794
SCL26525.1
ATPase family associated with various cellular activities (AAA); Belongs to the AAA ATPase family.
       0.792
SCL26505.1
Hypothetical protein.
       0.789
SCL26529.1
Helix-turn-helix domain.
       0.538
SCL26533.1
Protein of unknown function; Manually curated.
       0.498
Your Current Organism:
Micromonospora nigra
NCBI taxonomy Id: 145857
Other names: ATCC 33088, DSM 43818, IFO 16103, JCM 8973, M. nigra, Micromonospora halophytica subsp. nigra, Micromonospora halophytica var. nigra, NBRC 16103, NCIMB 2225, NRRL 3097
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.