STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL28901.1Cellulase/cellobiase CelA1; Belongs to the glycosyl hydrolase 12 (cellulase H) family. (383 aa)    
Predicted Functional Partners:
SCL14387.1
Poly(3-hydroxybutyrate) depolymerase.
 
     0.738
SCL34246.1
Cellulase (glycosyl hydrolase family 5); Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
  
  0.738
SCL32394.1
Endo-1,4-beta-xylanase; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
 
  
  0.736
SCL21710.1
Ricin-type beta-trefoil lectin domain-like.
 
     0.725
SCL32320.1
Right handed beta helix region.
  
     0.702
SCL16547.1
Feruloyl esterase.
 
     0.610
SCL13684.1
Protein of unknown function, DUF624.
 
    0.601
SCL18765.1
Beta-glucanase, GH16 family.
  
  
  0.590
SCL34298.1
Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family.
  
    0.582
SCL14392.1
Endo-1,4-beta-xylanase (glycosyl hydrolase family 10).
 
     0.577
Your Current Organism:
Micromonospora nigra
NCBI taxonomy Id: 145857
Other names: ATCC 33088, DSM 43818, IFO 16103, JCM 8973, M. nigra, Micromonospora halophytica subsp. nigra, Micromonospora halophytica var. nigra, NBRC 16103, NCIMB 2225, NRRL 3097
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