STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KON90002.1Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology. (300 aa)    
Predicted Functional Partners:
KON86138.1
NADH:ubiquinone oxidoreductase subunit M; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.944
KON87969.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.902
KON86283.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.896
secY
Preprotein translocase subunit SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.
    
   0.836
KON87746.1
Conjugal transfer protein TraB; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.836
KON87955.1
Endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.684
KON90179.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.583
KON88735.1
Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.583
KON88743.1
Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.583
KON88744.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.583
Your Current Organism:
Sporosarcina globispora
NCBI taxonomy Id: 1459
Other names: ATCC 23301, Bacillus globisporus, CCM 2119, CCUG 7419, CIP 103266, DSM 4, HAMBI 471, IFO 16082, JCM 10046, LMG 6928, LMG:6928, NBRC 16082, NCIMB 11434, NRRL B-3396, S. globispora, strain 785, strain W 25, strain W25
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