STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCB_0254Uncharacterized protein. (148 aa)    
Predicted Functional Partners:
RMCB_0253
Long-chain (C50)-Z-isoprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
  
  
 0.938
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
     
 0.910
RMCB_0255
MutT/NUDIX family protein.
       0.834
RMCB_0251
Amidase; Belongs to the amidase family.
       0.787
RMCB_2599
Uncharacterized protein.
  
     0.770
RMCB_3257
Secreted protein.
  
     0.762
RMCB_5204
Transmembrane protein.
  
     0.762
RMCB_6276
Hypothetical protein.
  
     0.761
RMCB_2712
Transmembrane protein.
  
     0.758
RMCB_5987
Conserved alanine and valine rich protein.
  
     0.757
Your Current Organism:
Mycolicibacterium brisbanense
NCBI taxonomy Id: 146020
Other names: ATCC 49938, CCUG 47584, DSM 44680, JCM 15654, M. brisbanense, Mycobacterium brisbanense, Mycobacterium brisbanense Schinsky et al. 2004, Mycobacterium genomospecies 4, Mycolicibacterium brisbanense (Schinsky et al. 2004) Gupta et al. 2018, strain W6743
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.