STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCB_0302long-chain-fatty-acid--CoA ligase. (506 aa)    
Predicted Functional Partners:
RMCB_2204
Linear gramicidin synthetase subunit D.
0.977
RMCB_7128
Beta-ketoacyl synthase.
 0.929
RMCB_6833
Phenolpthiocerol synthesis type-I polyketide synthase ppsC.
 0.926
RMCB_6287
Polyketide synthase pks5.
 0.916
RMCB_6923
Beta-ketoacyl synthase.
 0.907
RMCB_3204
Beta-ketoacyl synthase.
 0.906
RMCB_2472
acyl-CoA dehydrogenase fadE14.
 
 
 0.885
RMCB_4974
Polyketide synthase pks13.
 0.878
RMCB_0236
Peptide synthetase mbtE.
  0.872
RMCB_0235
Polyketide synthase.
 
 0.864
Your Current Organism:
Mycolicibacterium brisbanense
NCBI taxonomy Id: 146020
Other names: ATCC 49938, CCUG 47584, DSM 44680, JCM 15654, M. brisbanense, Mycobacterium brisbanense, Mycobacterium brisbanense Schinsky et al. 2004, Mycobacterium genomospecies 4, Mycolicibacterium brisbanense (Schinsky et al. 2004) Gupta et al. 2018, strain W6743
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.