STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCB_0715Zn-dependent hydrolase, glyoxylase. (279 aa)    
Predicted Functional Partners:
RMCB_0714
Acetyl esterase.
 
    0.860
RMCB_0717
Putative SHCHC synthase.
 
     0.785
RMCB_0718
Zn-dependent hydrolase, glyoxylase.
 
    
0.771
RMCB_0716
Conserved protein of DIM6/NTAB family.
       0.760
RMCB_0719
Uncharacterized protein.
       0.746
RMCB_5994
Molybdopterin biosynthesis-like protein MoeZ.
  
 0.682
RMCB_0076
Uncharacterized protein.
  
     0.589
RMCB_5744
Uncharacterized protein.
  
     0.589
RMCB_1589
Uncharacterized protein.
  
     0.574
RMCB_6737
Uncharacterized protein.
    
   0.556
Your Current Organism:
Mycolicibacterium brisbanense
NCBI taxonomy Id: 146020
Other names: ATCC 49938, CCUG 47584, DSM 44680, JCM 15654, M. brisbanense, Mycobacterium brisbanense, Mycobacterium brisbanense Schinsky et al. 2004, Mycobacterium genomospecies 4, Mycolicibacterium brisbanense (Schinsky et al. 2004) Gupta et al. 2018, strain W6743
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