STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCB_0877Monooxygenase, FAD-binding protein. (338 aa)    
Predicted Functional Partners:
RMCB_0875
Chalcone/stilbene synthase.
 
  
 0.987
RMCB_0876
Isoprenylcysteine carboxyl methyltransferase.
 
  
 0.987
RMCB_5420
Electron transfer flavoprotein beta subunit fixA.
  
 
 0.912
RMCB_1093
Transmembrane anti-sigma factor.
   
  
 0.795
RMCB_5419
Electron transfer flavoprotein alpha subunit fixB.
  
 
 0.758
RMCB_0874
Aminopeptidase Y Metallo peptidase MEROPS family M28A.
       0.737
RMCB_0873
Lipoprotein aminopeptidase lpqL.
       0.720
RMCB_5821
glycine/D-amino acid oxidase, deaminating.
  
 
 0.612
RMCB_6833
Phenolpthiocerol synthesis type-I polyketide synthase ppsC.
  
 0.581
RMCB_7128
Beta-ketoacyl synthase.
  
 0.581
Your Current Organism:
Mycolicibacterium brisbanense
NCBI taxonomy Id: 146020
Other names: ATCC 49938, CCUG 47584, DSM 44680, JCM 15654, M. brisbanense, Mycobacterium brisbanense, Mycobacterium brisbanense Schinsky et al. 2004, Mycobacterium genomospecies 4, Mycolicibacterium brisbanense (Schinsky et al. 2004) Gupta et al. 2018, strain W6743
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