Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
RMCB_1000 | RMCB_1001 | RMCB_1000 | RMCB_1001 | Glucose-1-phosphate cytidylyltransferase. | GlcNAc-PI de-N-acetylase. | 0.969 |
RMCB_1000 | RMCB_1002 | RMCB_1000 | RMCB_1002 | Glucose-1-phosphate cytidylyltransferase. | CDP-glucose 4,6-dehydratase. | 0.987 |
RMCB_1000 | RMCB_1003 | RMCB_1000 | RMCB_1003 | Glucose-1-phosphate cytidylyltransferase. | Methyltransferase domain protein. | 0.816 |
RMCB_1000 | RMCB_1072 | RMCB_1000 | RMCB_1072 | Glucose-1-phosphate cytidylyltransferase. | dTDP-4-dehydrorhamnose 3,5-epimerase rmlC. | 0.897 |
RMCB_1001 | RMCB_1000 | RMCB_1001 | RMCB_1000 | GlcNAc-PI de-N-acetylase. | Glucose-1-phosphate cytidylyltransferase. | 0.969 |
RMCB_1001 | RMCB_1003 | RMCB_1001 | RMCB_1003 | GlcNAc-PI de-N-acetylase. | Methyltransferase domain protein. | 0.806 |
RMCB_1002 | RMCB_1000 | RMCB_1002 | RMCB_1000 | CDP-glucose 4,6-dehydratase. | Glucose-1-phosphate cytidylyltransferase. | 0.987 |
RMCB_1002 | RMCB_1003 | RMCB_1002 | RMCB_1003 | CDP-glucose 4,6-dehydratase. | Methyltransferase domain protein. | 0.900 |
RMCB_1002 | RMCB_1004 | RMCB_1002 | RMCB_1004 | CDP-glucose 4,6-dehydratase. | Uncharacterized protein. | 0.565 |
RMCB_1002 | RMCB_1072 | RMCB_1002 | RMCB_1072 | CDP-glucose 4,6-dehydratase. | dTDP-4-dehydrorhamnose 3,5-epimerase rmlC. | 0.648 |
RMCB_1003 | RMCB_1000 | RMCB_1003 | RMCB_1000 | Methyltransferase domain protein. | Glucose-1-phosphate cytidylyltransferase. | 0.816 |
RMCB_1003 | RMCB_1001 | RMCB_1003 | RMCB_1001 | Methyltransferase domain protein. | GlcNAc-PI de-N-acetylase. | 0.806 |
RMCB_1003 | RMCB_1002 | RMCB_1003 | RMCB_1002 | Methyltransferase domain protein. | CDP-glucose 4,6-dehydratase. | 0.900 |
RMCB_1003 | RMCB_1004 | RMCB_1003 | RMCB_1004 | Methyltransferase domain protein. | Uncharacterized protein. | 0.773 |
RMCB_1003 | RMCB_1072 | RMCB_1003 | RMCB_1072 | Methyltransferase domain protein. | dTDP-4-dehydrorhamnose 3,5-epimerase rmlC. | 0.789 |
RMCB_1003 | RMCB_2059 | RMCB_1003 | RMCB_2059 | Methyltransferase domain protein. | Magnesium chelatase. | 0.687 |
RMCB_1003 | RMCB_2810 | RMCB_1003 | RMCB_2810 | Methyltransferase domain protein. | Diadenosine tetraphosphatase and related serine/threonine protein phosphatase. | 0.903 |
RMCB_1003 | cysC | RMCB_1003 | RMCB_3429 | Methyltransferase domain protein. | Bifunctional enzyme CysN/CysC; Catalyzes the synthesis of activated sulfate. Belongs to the APS kinase family. | 0.652 |
RMCB_1003 | cysN | RMCB_1003 | RMCB_0355 | Methyltransferase domain protein. | Bifunctional sulfate adenyltransferase/adenylylsulfate kinase cysN/cysC; Catalyzes the synthesis of activated sulfate. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily. | 0.652 |
RMCB_1003 | gcvP | RMCB_1003 | RMCB_1302 | Methyltransferase domain protein. | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.612 |
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