STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCB_1037Nucleic acid-binding protein. (298 aa)    
Predicted Functional Partners:
RMCB_1036
Lipid-transfer protein.
 
 0.996
RMCB_1035
Lipid carrier protein or keto acyl-CoA thiolase ltp3.
 
 0.995
RMCB_1038
Coenzyme F420-dependent oxidoreductase.
 
   
 0.969
RMCB_0988
Lipid-transfer protein.
 
 0.929
RMCB_1033
Ketosteroid isomerase-like protein.
 
     0.926
RMCB_1034
Oxidoreductase.
 
   
 0.903
RMCB_0982
acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
 
 0.885
RMCB_0987
MaoC-like dehydratase.
 
 
 0.884
RMCB_6312
enoyl-CoA hydratase.
 
  
 0.821
RMCB_4271
Dehydratase.
 
 
 0.815
Your Current Organism:
Mycolicibacterium brisbanense
NCBI taxonomy Id: 146020
Other names: ATCC 49938, CCUG 47584, DSM 44680, JCM 15654, M. brisbanense, Mycobacterium brisbanense, Mycobacterium brisbanense Schinsky et al. 2004, Mycobacterium genomospecies 4, Mycolicibacterium brisbanense (Schinsky et al. 2004) Gupta et al. 2018, strain W6743
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