STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCB_1234Glucose dehydrogenase. (539 aa)    
Predicted Functional Partners:
RMCB_4171
Ubiquinol-cytochrome C reductase qcrC, cytochrome C subunit.
   
 
 0.892
RMCB_1235
Uncharacterized protein.
       0.779
RMCB_1236
Uncharacterized protein.
       0.773
RMCB_1237
Transcriptional regulator, GntR family.
       0.773
RMCB_2300
Uncharacterized protein.
    
  0.759
RMCB_3034
Immunogenic protein MPB64/MPT64, precursor.
    
  0.759
RMCB_5134
Lipoprotein.
    
  0.759
RMCB_5261
Uncharacterized protein.
    
  0.759
RMCB_5440
Immunogenic protein MPB64/MPT64.
    
  0.759
RMCB_0443
TPR repeat-containing protein.
    
  0.731
Your Current Organism:
Mycolicibacterium brisbanense
NCBI taxonomy Id: 146020
Other names: ATCC 49938, CCUG 47584, DSM 44680, JCM 15654, M. brisbanense, Mycobacterium brisbanense, Mycobacterium brisbanense Schinsky et al. 2004, Mycobacterium genomospecies 4, Mycolicibacterium brisbanense (Schinsky et al. 2004) Gupta et al. 2018, strain W6743
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.