Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RMCB_1237Transcriptional regulator, GntR family. (239 aa)    
Predicted Functional Partners:
RMCB_2163
Uncharacterized protein.
  
     0.774
RMCB_1234
Glucose dehydrogenase.
       0.773
RMCB_1235
Uncharacterized protein.
       0.773
RMCB_1236
Uncharacterized protein.
       0.773
RMCB_0659
GntR family transcriptional regulator.
  
  
 0.770
RMCB_4833
Transcriptional regulator.
  
  
 0.770
RMCB_5980
Putative GntR family transcriptional regulator.
  
  
 0.752
RMCB_6907
Transcriptional regulator, GntR family.
  
  
 0.749
RMCB_4615
GntR family transcriptional regulator.
  
  
 0.748
RMCB_6895
Bacterial regulatory s, gntR family protein.
  
  
 0.748
Your Current Organism:
Mycolicibacterium brisbanense
NCBI taxonomy Id: 146020
Other names: ATCC 49938, CCUG 47584, DSM 44680, JCM 15654, M. brisbanense, Mycobacterium brisbanense, Mycobacterium brisbanense Schinsky et al. 2004, Mycobacterium genomospecies 4, Mycolicibacterium brisbanense (Schinsky et al. 2004) Gupta et al. 2018, strain W6743
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