STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCB_2558Ring-hydroxylating dioxygenase, large terminal subunit. (351 aa)    
Predicted Functional Partners:
RMCB_3864
Ring hydroxylating enzyme beta subunit.
  
 0.944
RMCB_5950
Benzoate 1,2-dioxygenase small subunit.
  
 0.944
RMCB_2559
Ferredoxin.
 
 
 0.920
RMCB_5949
1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase.
  
 
 0.760
RMCB_4859
Oxidoreductase.
 
 
 0.738
RMCB_4072
Phthalate 4,5-dioxygenase.
 
 
 0.735
RMCB_3377
Rieske (2Fe-2S) protein.
  
     0.704
RMCB_1587
Oxidoreductase.
 
 
 0.703
RMCB_3963
3-ketosteroid 9alpha-hydroxylase component KshB.
 
 
 0.686
RMCB_1798
Hemoglobine-related protein hmp.
 
 
 0.681
Your Current Organism:
Mycolicibacterium brisbanense
NCBI taxonomy Id: 146020
Other names: ATCC 49938, CCUG 47584, DSM 44680, JCM 15654, M. brisbanense, Mycobacterium brisbanense, Mycobacterium brisbanense Schinsky et al. 2004, Mycobacterium genomospecies 4, Mycolicibacterium brisbanense (Schinsky et al. 2004) Gupta et al. 2018, strain W6743
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