STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCB_2585Amidohydrolase. (271 aa)    
Predicted Functional Partners:
RMCB_2584
Uncharacterized protein.
       0.801
RMCB_2586
Uncharacterized protein.
       0.799
RMCB_2587
Protein of unknown function.
       0.734
RMCB_1911
Glutamate synthase (NADPH/NADH) large chain.
    
 0.725
RMCB_5038
Ferredoxin-dependent glutamate synthase [NADPH] large subunit gltB.
    
 0.725
RMCB_0677
Cytidylyltransferase.
    
 0.706
RMCB_6116
Fumarate hydratase; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
    
  0.662
RMCB_3765
Oxidoreductase subunit alpha.
    
  0.628
RMCB_5732
Indolepyruvate ferredoxin oxidoreductase.
    
  0.627
RMCB_0275
Alpha-ketoglutarate decarboxylase.
     
 0.574
Your Current Organism:
Mycolicibacterium brisbanense
NCBI taxonomy Id: 146020
Other names: ATCC 49938, CCUG 47584, DSM 44680, JCM 15654, M. brisbanense, Mycobacterium brisbanense, Mycobacterium brisbanense Schinsky et al. 2004, Mycobacterium genomospecies 4, Mycolicibacterium brisbanense (Schinsky et al. 2004) Gupta et al. 2018, strain W6743
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