Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
RMCB_0827 | RMCB_2938 | RMCB_0827 | RMCB_2938 | TetR family transcriptional regulator. | Uncharacterized protein. | 0.455 |
RMCB_0859 | RMCB_2938 | RMCB_0859 | RMCB_2938 | Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family. | Uncharacterized protein. | 0.677 |
RMCB_0859 | RMCB_3830 | RMCB_0859 | RMCB_3830 | Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family. | Carboxylesterase. | 0.509 |
RMCB_2937 | RMCB_2938 | RMCB_2937 | RMCB_2938 | Transcriptional regulator. | Uncharacterized protein. | 0.676 |
RMCB_2938 | RMCB_0827 | RMCB_2938 | RMCB_0827 | Uncharacterized protein. | TetR family transcriptional regulator. | 0.455 |
RMCB_2938 | RMCB_0859 | RMCB_2938 | RMCB_0859 | Uncharacterized protein. | Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family. | 0.677 |
RMCB_2938 | RMCB_2937 | RMCB_2938 | RMCB_2937 | Uncharacterized protein. | Transcriptional regulator. | 0.676 |
RMCB_2938 | RMCB_3830 | RMCB_2938 | RMCB_3830 | Uncharacterized protein. | Carboxylesterase. | 0.437 |
RMCB_2938 | RMCB_5087 | RMCB_2938 | RMCB_5087 | Uncharacterized protein. | Elongation factor G. | 0.698 |
RMCB_2938 | RMCB_6211 | RMCB_2938 | RMCB_6211 | Uncharacterized protein. | Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. | 0.526 |
RMCB_2938 | RMCB_6476 | RMCB_2938 | RMCB_6476 | Uncharacterized protein. | Uncharacterized protein. | 0.567 |
RMCB_2938 | fusA | RMCB_2938 | RMCB_1212 | Uncharacterized protein. | Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily. | 0.698 |
RMCB_2938 | ribBA | RMCB_2938 | RMCB_6218 | Uncharacterized protein. | Bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family. | 0.443 |
RMCB_2938 | rph | RMCB_2938 | RMCB_6557 | Uncharacterized protein. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.637 |
RMCB_3830 | RMCB_0859 | RMCB_3830 | RMCB_0859 | Carboxylesterase. | Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family. | 0.509 |
RMCB_3830 | RMCB_2938 | RMCB_3830 | RMCB_2938 | Carboxylesterase. | Uncharacterized protein. | 0.437 |
RMCB_5087 | RMCB_2938 | RMCB_5087 | RMCB_2938 | Elongation factor G. | Uncharacterized protein. | 0.698 |
RMCB_5087 | RMCB_6476 | RMCB_5087 | RMCB_6476 | Elongation factor G. | Uncharacterized protein. | 0.739 |
RMCB_6211 | RMCB_2938 | RMCB_6211 | RMCB_2938 | Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. | Uncharacterized protein. | 0.526 |
RMCB_6211 | ribBA | RMCB_6211 | RMCB_6218 | Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. | Bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family. | 0.999 |
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