STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCB_3560Uncharacterized protein; Belongs to the long-chain O-acyltransferase family. (452 aa)    
Predicted Functional Partners:
RMCB_5579
Diacylglycerol kinase.
  
  
  0.901
RMCB_6287
Polyketide synthase pks5.
  
 0.859
RMCB_6923
Beta-ketoacyl synthase.
  
 0.859
RMCB_3559
Hypothetical protein.
 
    0.810
RMCB_3558
Acyl carrier protein.
   
  0.796
RMCB_2101
Oxidoreductase, short-chain dehydrogenase/reductase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  
 0.795
RMCB_3910
Short chain dehydrogenase.
 
  
 0.785
RMCB_5919
Acyltransferase, WS/DGAT/MGAT; Belongs to the long-chain O-acyltransferase family.
  
  
 
0.780
RMCB_7048
Diacylglycerol O-acyltransferase; Belongs to the long-chain O-acyltransferase family.
  
  
 
0.777
RMCB_3548
Diacylglycerol O-acyltransferase.
  
  
 
0.742
Your Current Organism:
Mycolicibacterium brisbanense
NCBI taxonomy Id: 146020
Other names: ATCC 49938, CCUG 47584, DSM 44680, JCM 15654, M. brisbanense, Mycobacterium brisbanense, Mycobacterium brisbanense Schinsky et al. 2004, Mycobacterium genomospecies 4, Mycolicibacterium brisbanense (Schinsky et al. 2004) Gupta et al. 2018, strain W6743
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