STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCB_3960Fumarate reductase/succinate dehydrogenase. (486 aa)    
Predicted Functional Partners:
RMCB_4040
Succinate dehydrogenase.
  
 0.990
RMCB_3961
2,3-dihydroxybiphenyl 1,2-dioxygenase.
 
     0.969
RMCB_0606
Fumarate reductase iron-sulfur subunit frdB; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
  
 0.949
RMCB_4037
Succinate dehydrogenase iron-sulfur subunit.
  
 0.949
RMCB_6931
Succinate dehydrogenase iron-sulfur protein.
  
 0.949
RMCB_6362
Nuclear transport factor 2.
  
  
  0.945
RMCB_4527
NTF2 domain-containing protein.
  
  
  0.943
RMCB_0275
Alpha-ketoglutarate decarboxylase.
  
 0.942
RMCB_1033
Ketosteroid isomerase-like protein.
  
  
  0.939
RMCB_6116
Fumarate hydratase; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
  
 
 0.937
Your Current Organism:
Mycolicibacterium brisbanense
NCBI taxonomy Id: 146020
Other names: ATCC 49938, CCUG 47584, DSM 44680, JCM 15654, M. brisbanense, Mycobacterium brisbanense, Mycobacterium brisbanense Schinsky et al. 2004, Mycobacterium genomospecies 4, Mycolicibacterium brisbanense (Schinsky et al. 2004) Gupta et al. 2018, strain W6743
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