STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCB_4399Methanol dehydrogenase transcriptional regulatory protein moxR3. (324 aa)    
Predicted Functional Partners:
RMCB_4400
ATPase AAA.
 
  
 0.893
RMCB_4397
Uncharacterized protein.
       0.797
RMCB_4401
Membrane protein.
       0.796
RMCB_4398
Uncharacterized protein.
       0.795
RMCB_4402
Uncharacterized protein, precursor.
       0.773
RMCB_4403
Cobalamin biosynthesis protein cobN.
    
 0.757
RMCB_3490
Uncharacterized protein.
 
  
 0.691
RMCB_5403
Putative uncharacterized protein.
 
  
 0.688
RMCB_6271
Hypothetical protein.
  
 0.662
RMCB_4404
PPOX class probable F420-dependent enzyme, Rv2061 family.
       0.614
Your Current Organism:
Mycolicibacterium brisbanense
NCBI taxonomy Id: 146020
Other names: ATCC 49938, CCUG 47584, DSM 44680, JCM 15654, M. brisbanense, Mycobacterium brisbanense, Mycobacterium brisbanense Schinsky et al. 2004, Mycobacterium genomospecies 4, Mycolicibacterium brisbanense (Schinsky et al. 2004) Gupta et al. 2018, strain W6743
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