STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCB_46916-aminohexanoate-dimer hydrolase. (396 aa)    
Predicted Functional Partners:
RMCB_4693
Biotin carboxylase-like protein.
 
     0.846
RMCB_3594
Biotin carboxylase-like protein.
 
     0.761
RMCB_4692
Putative 6-aminohexanoate-dimer hydrolase.
 
    
0.591
RMCB_3369
Amino acid decarboxylase.
  
     0.545
RMCB_5158
Peptidase C45 acyl-coenzyme A, 6-aminopenicillanic acid acyl-transferase.
  
     0.532
RMCB_4690
Tyramine oxidase.
       0.518
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
     
 0.514
RMCB_4689
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
    0.503
RMCB_2972
Arginine/lysine/ornithine decarboxylase.
  
     0.485
Your Current Organism:
Mycolicibacterium brisbanense
NCBI taxonomy Id: 146020
Other names: ATCC 49938, CCUG 47584, DSM 44680, JCM 15654, M. brisbanense, Mycobacterium brisbanense, Mycobacterium brisbanense Schinsky et al. 2004, Mycobacterium genomospecies 4, Mycolicibacterium brisbanense (Schinsky et al. 2004) Gupta et al. 2018, strain W6743
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