Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
RMCB_1070 | RMCB_6400 | F420-dependent methylene-tetrahydromethanopterin reductase. | 29 kDa antigen cfp29. | 0.416 |
RMCB_1070 | RMCB_6421 | F420-dependent methylene-tetrahydromethanopterin reductase. | Protein of unknown function. | 0.416 |
RMCB_2374 | RMCB_6400 | Protease; Belongs to the peptidase S8 family. | 29 kDa antigen cfp29. | 0.525 |
RMCB_5246 | RMCB_6400 | Transmembrane protein. | 29 kDa antigen cfp29. | 0.447 |
RMCB_6400 | RMCB_1070 | 29 kDa antigen cfp29. | F420-dependent methylene-tetrahydromethanopterin reductase. | 0.416 |
RMCB_6400 | RMCB_2374 | 29 kDa antigen cfp29. | Protease; Belongs to the peptidase S8 family. | 0.525 |
RMCB_6400 | RMCB_5246 | 29 kDa antigen cfp29. | Transmembrane protein. | 0.447 |
RMCB_6400 | RMCB_6401 | 29 kDa antigen cfp29. | Dyp-type peroxidase. | 0.983 |
RMCB_6400 | RMCB_6402 | 29 kDa antigen cfp29. | Aminopeptidase pepC. | 0.779 |
RMCB_6400 | RMCB_6403 | 29 kDa antigen cfp29. | Glyoxalase/bleomycin resistance protein/dioxygenase. | 0.674 |
RMCB_6400 | RMCB_6404 | 29 kDa antigen cfp29. | NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain protein. | 0.460 |
RMCB_6400 | RMCB_6421 | 29 kDa antigen cfp29. | Protein of unknown function. | 0.535 |
RMCB_6401 | RMCB_6400 | Dyp-type peroxidase. | 29 kDa antigen cfp29. | 0.983 |
RMCB_6401 | RMCB_6402 | Dyp-type peroxidase. | Aminopeptidase pepC. | 0.780 |
RMCB_6401 | RMCB_6403 | Dyp-type peroxidase. | Glyoxalase/bleomycin resistance protein/dioxygenase. | 0.699 |
RMCB_6401 | RMCB_6404 | Dyp-type peroxidase. | NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain protein. | 0.460 |
RMCB_6402 | RMCB_6400 | Aminopeptidase pepC. | 29 kDa antigen cfp29. | 0.779 |
RMCB_6402 | RMCB_6401 | Aminopeptidase pepC. | Dyp-type peroxidase. | 0.780 |
RMCB_6402 | RMCB_6403 | Aminopeptidase pepC. | Glyoxalase/bleomycin resistance protein/dioxygenase. | 0.871 |
RMCB_6402 | RMCB_6404 | Aminopeptidase pepC. | NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain protein. | 0.654 |
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