STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCB_6963Dehydrogenase. (341 aa)    
Predicted Functional Partners:
RMCB_0311
Acetoin reductase family protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
  0.845
RMCB_6964
4-hydroxyacetophenone monooxygenase.
    
  0.816
RMCB_3085
PTS system D-fructose-specific IIABC component (F1P-forming), Frc family.
  
 
 0.789
RMCB_7089
8-amino-7-oxononanoate synthase.
  
 
 0.725
RMCB_3765
Oxidoreductase subunit alpha.
    
 0.705
RMCB_6604
Oxidoreductase FAD-binding subunit.
  
 
 0.675
RMCB_0548
Mannitol 2-dehydrogenase.
    
 0.668
RMCB_2466
Phosphoglucomutase.
   
 0.639
RMCB_5523
Iron-containing alcohol dehydrogenase.
  
 
 0.637
soxA
Sarcosine oxidase subunit alpha.
  
 
 0.635
Your Current Organism:
Mycolicibacterium brisbanense
NCBI taxonomy Id: 146020
Other names: ATCC 49938, CCUG 47584, DSM 44680, JCM 15654, M. brisbanense, Mycobacterium brisbanense, Mycobacterium brisbanense Schinsky et al. 2004, Mycobacterium genomospecies 4, Mycolicibacterium brisbanense (Schinsky et al. 2004) Gupta et al. 2018, strain W6743
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