STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAK05606.1Hypothetical protein. (268 aa)    
Predicted Functional Partners:
GAK05607.1
Hypothetical protein.
       0.773
GAK03451.1
Hypothetical protein.
    
 0.753
GAK05183.1
Phosphotransferase system, phosphocarrier protein HPr.
    
 0.753
GAK02668.1
Catabolite repression HPr-like protein Crh.
    
 0.753
GAK03180.1
uroporphyrinogen-III methyltransferase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
    
  0.708
GAK03547.1
uroporphyrinogen-III methyltransferase; Belongs to the precorrin methyltransferase family.
    
  0.708
GAK02900.1
Free methionine-(R)-sulfoxide reductase.
    
  0.636
moaA
Molybdenum cofactor biosynthesis protein MoaA; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.
    
  0.630
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
    
  0.624
GAK05258.1
GTP pyrophosphokinase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
    
  0.617
Your Current Organism:
Geomicrobium sp. JCM19037
NCBI taxonomy Id: 1460634
Other names: G. sp. JCM 19037, Geomicrobium sp. JCM 19037
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.