STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAK05713.1TRAP-type C4-dicarboxylate transport system, large permease component. (402 aa)    
Predicted Functional Partners:
GAK03449.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
  0.921
GAK03932.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
  0.903
GAK05395.1
TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter.
 
  0.900
GAK05368.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
  0.895
GAK05711.1
TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
 
  0.894
GAK02817.1
TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
 
  0.829
GAK03447.1
TRAP-type C4-dicarboxylate transport system, periplasmic component.
  
 
  0.827
GAK03933.1
TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
 
  0.827
GAK05131.1
TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
 
  0.827
GAK05394.1
TRAP transporter solute receptor.
 
 
  0.827
Your Current Organism:
Geomicrobium sp. JCM19037
NCBI taxonomy Id: 1460634
Other names: G. sp. JCM 19037, Geomicrobium sp. JCM 19037
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.