STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAK06129.1Osmotically activated L-carnitine/choline ABC transporter, permease protein OpuCB. (519 aa)    
Predicted Functional Partners:
GAK06128.1
L-proline glycine betaine ABC transport system permease protein ProV.
 0.998
GAK04439.1
Osmotically activated L-carnitine/choline ABC transporter, ATP-binding protein OpuCA.
 0.992
GAK04941.1
L-proline glycine betaine ABC transport system permease protein ProV.
 0.992
GAK04942.1
Probable glycine betaine/carnitine/choline ABC transporter.
 
 0.992
GAK05373.1
Glycine betaine ABC transport system, permease protein OpuAB.
 
 
0.957
GAK05375.1
Glycine betaine ABC transport system, ATP-binding protein OpuAA.
 
 0.930
GAK04441.1
Osmotically activated L-carnitine/choline ABC transporter, substrate-binding protein OpuCC.
 
 
0.818
GAK04944.1
Osmotically activated L-carnitine/choline ABC transporter, substrate-binding protein OpuCC.
 
 
0.806
potA
Putrescine transport ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
    
  0.794
GAK05479.1
Putrescine transport ATP-binding protein PotA; Belongs to the ABC transporter superfamily.
    
  0.794
Your Current Organism:
Geomicrobium sp. JCM19037
NCBI taxonomy Id: 1460634
Other names: G. sp. JCM 19037, Geomicrobium sp. JCM 19037
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